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Details about package smoldyn

Name:	smoldyn
Uploader:	Gürkan Myczko <gurkan@phys.ethz.ch> (Debian QA page)
Description:	smoldyn-examples - spatial stochastic simulator for chemical reaction networks smoldyn-doc - spatial stochastic simulator for chemical reaction networks smoldyn - spatial stochastic simulator for chemical reaction networks

Package uploads

Upload #1

Information

Version:	2.62-1
Uploaded:	2020-12-05 20:34
Source package:	smoldyn_2.62-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	http://www.smoldyn.org/
Vcs-Browser:	https://salsa.debian.org/debian/smoldyn
Vcs-Git:	https://salsa.debian.org/debian/smoldyn.git
Closes bugs:	#942842

Changelog

 smoldyn (2.62-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942842)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13
–
Package is the latest upstream version

local: 2.62

upstream: 2.62

url: https://github.com/ssandrews/Smoldyn/archive/v2.62.tar.gz
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Package is not native

format: 3.0 (quilt)
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"Maintainer" email is the same as the uploader
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Package has lintian errors
smoldyn
- E lacks-ldconfig-trigger
  - usr/lib/libsmoldyn_shared.so
- W no-manual-page
  - usr/bin/smoldyn
- W package-name-doesnt-match-sonames
  - libsmoldyn-shared
- W shared-library-lacks-version
  - usr/lib/libsmoldyn_shared.so libsmoldyn_shared.so
- X exit-in-shared-library
  - usr/lib/libsmoldyn_shared.so
- I no-symbols-control-file
  - usr/lib/libsmoldyn_shared.so
- I spelling-error-in-binary
  - usr/bin/smoldyn itsef itself
  - usr/bin/smoldyn ment meant
  - usr/lib/libsmoldyn_shared.so itsef itself
  - usr/lib/libsmoldyn_shared.so ment meant
smoldyn source
- W ambiguous-paragraph-in-dep5-copyright
  - paragraph at line 14
- W missing-license-paragraph-in-dep5-copyright
  - lgpl-3 (line 8)
  - yes (line 27)
- W missing-license-text-in-dep5-copyright
  - yes (line 15)
- W source-contains-prebuilt-windows-binary
  - source/MSVClibs/freeglut.dll
- I duplicate-short-description
  - smoldyn smoldyn-doc smoldyn-examples
- X debian-rules-uses-as-needed-linker-flag
  - line 11
- X debian-watch-does-not-check-gpg-signature
smoldyn-doc
- I possible-documentation-but-no-doc-base-registration
- I wrong-section-according-to-package-name
  - smoldyn-doc => doc
smoldyn-examples
- I package-contains-empty-directory
  - usr/share/doc/smoldyn-examples/examples/S14_lattice/diffusionimages/
  - usr/share/doc/smoldyn-examples/examples/S14_lattice/vtkout/
  - usr/share/doc/smoldyn-examples/examples/S2_config/clusterscripts/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_228/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_229/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_230/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_231/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_232/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_233/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_234/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_235/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_236/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_237/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_238/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_239/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_240/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_241/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_242/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_243/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_244/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_245/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_246/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_247/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_248/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_249/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_250/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_251/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_252/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_253/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_254/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_255/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_256/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_257/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_258/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_260/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_261/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_262/
  - usr/share/doc/smoldyn-examples/examples/S9_compartments/diffusecmptimages/
- X duplicate-files
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/abba/abba.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/abba/abba.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/abba/abbasim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/lrm/lrm.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrm.bngl usr/share/doc/smoldyn-examples/examples/S95_regression/lrm.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/lrm/lrmsim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_end/polymer_end.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_end/polymer_end.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_end/polymer_endsim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_end/polymer_endsim.txt
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_mid/polymer_mid.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_mid/polymer_mid.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_mid/polymer_midsim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_mid/polymer_midsim.txt
  - usr/share/doc/smoldyn-examples/examples/S7_surfaces/surfacediffuse/ribbon.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/ribbon.txt
  - usr/share/doc/smoldyn-examples/examples/S7_surfaces/surfacediffuse/trispheretriangles.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/trispheretriangles.txt usr/share/doc/smoldyn-examples/examples/S95_regression/trispheretriangles.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/2Dreact/2Dreact.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/2Dreact.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/2Dreact/2Dreact.xlsx usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/2Dreact.xlsx
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/allostery/allostery.xls usr/share/doc/smoldyn-examples/examples/S8_reactions/conf_spread/confspread.xls
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/bounce/crowding4.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/excluded volume/crowding4.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/wildcards/lrm.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/wildcards/lrm.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2018/note1_lrm/lrm.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/wildcards/polymer_end.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/wildcards/polymer_end.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/wildcards/polymer_mid.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/wildcards/polymer_mid.txt
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Package closes ITP bug
- smoldyn:
  - #942842 (Wishlist, ITP): ITP: smoldyn -- spatial stochastic simulator for chemical reaction networks
–
Package is not in Debian
–
d/copyright is in DEP5 format

author: Steve Andrews <steven.s.andrews@gmail.com>

licenses: yes, LGPL-3

Comments

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local:	2.62
upstream:	2.62
url:	https://github.com/ssandrews/Smoldyn/archive/v2.62.tar.gz

author:	Steve Andrews <steven.s.andrews@gmail.com>
licenses:	yes, LGPL-3