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Details about package smoldyn

Name:	smoldyn
Uploader:	Gürkan Myczko <gurkan@phys.ethz.ch> (Debian QA page)
Description:	smoldyn-examples - spatial stochastic simulator for chemical reaction networks smoldyn-doc - spatial stochastic simulator for chemical reaction networks smoldyn - spatial stochastic simulator for chemical reaction networks

Package uploads

Upload #2

Information

Version:	2.63-1
Uploaded:	2021-03-18 11:51
Source package:	smoldyn_2.63-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	http://www.smoldyn.org/
Vcs-Browser:	https://salsa.debian.org/debian/smoldyn
Vcs-Git:	https://salsa.debian.org/debian/smoldyn.git
Closes bugs:	#942842

Changelog

 smoldyn (2.63-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942842)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13
–
Package is the latest upstream version

local: 2.63

upstream: 2.63

url: https://github.com/ssandrews/Smoldyn/archive/v2.63.tar.gz
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Package is not native

format: 3.0 (quilt)
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"Maintainer" email is the same as the uploader
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Package has lintian errors
smoldyn
- E lacks-ldconfig-trigger
  - usr/lib/libsmoldyn_shared.so
- W no-manual-page
  - usr/bin/smoldyn
- W package-name-doesnt-match-sonames
  - libsmoldyn-shared
- W shared-library-lacks-version
  - usr/lib/libsmoldyn_shared.so libsmoldyn_shared.so
- X exit-in-shared-library
  - usr/lib/libsmoldyn_shared.so
- I no-symbols-control-file
  - usr/lib/libsmoldyn_shared.so
- I spelling-error-in-binary
  - usr/bin/smoldyn itsef itself
  - usr/bin/smoldyn ment meant
  - usr/lib/libsmoldyn_shared.so itsef itself
  - usr/lib/libsmoldyn_shared.so ment meant
smoldyn source
- W ambiguous-paragraph-in-dep5-copyright
  - paragraph at line 14
- W missing-license-paragraph-in-dep5-copyright
  - lgpl-3 (line 8)
  - yes (line 27)
- W missing-license-text-in-dep5-copyright
  - yes (line 15)
- W source-contains-prebuilt-windows-binary
  - source/MSVClibs/freeglut.dll
  - windows/_freeglut/bin/freeglut.dll
  - windows/_freeglut/bin/x64/freeglut.dll
  - windows/dll/freeglut.dll
  - windows/dll/glut32.dll
  - windows/dll/jpeg62.dll
  - windows/dll/libgcc_s_dw2-1.dll
  - windows/dll/libstdc++-6.dll
  - windows/dll/libtiff3.dll
  - windows/dll/libz-1.dll
  - windows/dll/libz.dll
  - windows/dll/zlib1.dll
- I duplicate-short-description
  - smoldyn smoldyn-doc smoldyn-examples
- I out-of-date-standards-version
  - 4.5.0 (released 2020-01-20) (current is 4.5.1)
- X debian-rules-uses-as-needed-linker-flag
  - line 11
- X debian-watch-does-not-check-gpg-signature
smoldyn-doc
- I possible-documentation-but-no-doc-base-registration
- I wrong-section-according-to-package-name
  - smoldyn-doc => doc
smoldyn-examples
- W executable-not-elf-or-script
  - usr/share/doc/smoldyn-examples/examples/S2_config/clusterscripts/Babraham-Compute-Cluster-Cheat-Sheet.pdf
  - usr/share/doc/smoldyn-examples/examples/S2_config/clusterscripts/Cluster-User-Manual.pdf
  - usr/share/doc/smoldyn-examples/examples/S2_config/clusterscripts/smlaunch.sh
  - usr/share/doc/smoldyn-examples/examples/S99_more/Min/Min4a.txt
  - usr/share/doc/smoldyn-examples/examples/S99_more/Min/Min5a.txt
- X duplicate-files
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/abba/abba.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/abba/abba.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/abba/abba.net usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/abba/abba.net
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/abba/abbasim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/lrm/lrm.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrm.bngl usr/share/doc/smoldyn-examples/examples/S95_regression/lrm.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/lrm/lrm.net usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrm.net usr/share/doc/smoldyn-examples/examples/S95_regression/lrm.net
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/lrm/lrmsim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_end/polymer_end.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_end/polymer_end.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_end/polymer_end.net usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_end/polymer_end.net
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_end/polymer_endsim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_end/polymer_endsim.txt
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_mid/polymer_mid.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_mid/polymer_mid.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_mid/polymer_midsim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_mid/polymer_midsim.txt
  - usr/share/doc/smoldyn-examples/examples/S7_surfaces/surfacediffuse/ribbon.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/ribbon.txt
  - usr/share/doc/smoldyn-examples/examples/S7_surfaces/surfacediffuse/trispheretriangles.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/trispheretriangles.txt usr/share/doc/smoldyn-examples/examples/S95_regression/trispheretriangles.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/2Dreact/2Dreact.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/2Dreact.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/2Dreact/2Dreact.xlsx usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/2Dreact.xlsx
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/allostery/allostery.tif usr/share/doc/smoldyn-examples/examples/S8_reactions/conf_spread/confspread.tif
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/allostery/allostery.xls usr/share/doc/smoldyn-examples/examples/S8_reactions/conf_spread/confspread.xls
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/bounce/crowding4.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/excluded volume/crowding4.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/wildcards/lrm.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/wildcards/lrm.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2018/note1_lrm/lrm.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/wildcards/polymer_end.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/wildcards/polymer_end.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/wildcards/polymer_mid.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/wildcards/polymer_mid.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/FILEROOT_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/addspecies_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/addspecies_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/addspecies_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/allostery_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/allostery_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/allostery_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/bounce2_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/bounce2_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/bounce2_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/bounds1_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/bounds1_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/bounds1_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/bounds2_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/bounds2_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/bounds2_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/cmdmanipulate_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/cmdmanipulate_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/cmdmanipulate_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/compartlogic_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/compartlogic_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/compartlogic_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/compartrxn_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/compartrxn_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/compartrxn_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/diffa_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/diffa_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/diffa_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/drift_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/drift_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/drift_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/dumbbell_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/dumbbell_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/dumbbell_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/emitter1_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/emitter1_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/emitter1_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/molecule_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/molecule_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/molecule_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/rafts_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/rafts_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/rafts_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/surf1_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/surf1_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/surf1_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/surf2_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/surf2_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/surf2_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/surf3_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/surf3_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/surf3_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/surfaceboundjump_225_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/surfaceboundjump_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/surfaceboundjump_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/crowding_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/crowding_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/lotvolt_226_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/lotvolt_227_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_228/addspecies_228_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_229/addspecies_229_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_230/addspecies_230_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_231/addspecies_231_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_232/addspecies_232_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_233/addspecies_233_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_234/addspecies_234_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_235/addspecies_235_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_236/addspecies_236_out.txt
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  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_228/bounce2_228_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_229/bounce2_229_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_230/bounce2_230_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_231/bounce2_231_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_232/bounce2_232_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_233/bounce2_233_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_234/bounce2_234_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_235/bounce2_235_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_236/bounce2_236_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_228/bounds1_228_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_229/bounds1_229_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_230/bounds1_230_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_231/bounds1_231_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_232/bounds1_232_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_233/bounds1_233_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_234/bounds1_234_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_235/bounds1_235_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_236/bounds1_236_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_228/bounds2_228_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_229/bounds2_229_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_230/bounds2_230_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_231/bounds2_231_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_232/bounds2_232_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_233/bounds2_233_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_234/bounds2_234_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_235/bounds2_235_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_236/bounds2_236_out.txt
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_228/cmdmanipulate_228_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_229/cmdmanipulate_229_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_230/cmdmanipulate_230_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_231/cmdmanipulate_231_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_232/cmdmanipulate_232_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_233/cmdmanipulate_233_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_234/cmdmanipulate_234_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_235/cmdmanipulate_235_out.txt usr/share/doc/smoldyn-examples/examples/S95_regression/output_236/cmdmanipulate_236_out.txt
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  - usr/share/doc/smoldyn-examples/examples/S9_compartments/diffusecmptimages/image349.tif usr/share/doc/smoldyn-examples/examples/S9_compartments/diffusecmptimages/image350.tif
  - usr/share/doc/smoldyn-examples/examples/S9_compartments/diffusecmptimages/image351.tif usr/share/doc/smoldyn-examples/examples/S9_compartments/diffusecmptimages/image352.tif
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  - usr/share/doc/smoldyn-examples/examples/S9_compartments/diffusecmptimages/image373.tif usr/share/doc/smoldyn-examples/examples/S9_compartments/diffusecmptimages/image374.tif
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–
Package closes ITP bug
- smoldyn:
  - #942842 (Wishlist, ITP): ITP: smoldyn -- spatial stochastic simulator for chemical reaction networks
–
Package is not in Debian
–
d/copyright is in DEP5 format

author: Steve Andrews <steven.s.andrews@gmail.com>

licenses: LGPL-3, yes

Comments

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Upload #1

Information

Version:	2.62-1
Uploaded:	2020-12-05 20:34
Source package:	smoldyn_2.62-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	http://www.smoldyn.org/
Vcs-Browser:	https://salsa.debian.org/debian/smoldyn
Vcs-Git:	https://salsa.debian.org/debian/smoldyn.git
Closes bugs:	#942842

Changelog

 smoldyn (2.62-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942842)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13
–
Package is the latest upstream version

local: 2.62

upstream: 2.62

url: https://github.com/ssandrews/Smoldyn/archive/v2.62.tar.gz
–
Package is not native

format: 3.0 (quilt)
–
"Maintainer" email is the same as the uploader
–
Package has lintian errors
smoldyn
- E lacks-ldconfig-trigger
  - usr/lib/libsmoldyn_shared.so
- W no-manual-page
  - usr/bin/smoldyn
- W package-name-doesnt-match-sonames
  - libsmoldyn-shared
- W shared-library-lacks-version
  - usr/lib/libsmoldyn_shared.so libsmoldyn_shared.so
- X exit-in-shared-library
  - usr/lib/libsmoldyn_shared.so
- I no-symbols-control-file
  - usr/lib/libsmoldyn_shared.so
- I spelling-error-in-binary
  - usr/bin/smoldyn itsef itself
  - usr/bin/smoldyn ment meant
  - usr/lib/libsmoldyn_shared.so itsef itself
  - usr/lib/libsmoldyn_shared.so ment meant
smoldyn source
- W ambiguous-paragraph-in-dep5-copyright
  - paragraph at line 14
- W missing-license-paragraph-in-dep5-copyright
  - lgpl-3 (line 8)
  - yes (line 27)
- W missing-license-text-in-dep5-copyright
  - yes (line 15)
- W source-contains-prebuilt-windows-binary
  - source/MSVClibs/freeglut.dll
- I duplicate-short-description
  - smoldyn smoldyn-doc smoldyn-examples
- X debian-rules-uses-as-needed-linker-flag
  - line 11
- X debian-watch-does-not-check-gpg-signature
smoldyn-doc
- I possible-documentation-but-no-doc-base-registration
- I wrong-section-according-to-package-name
  - smoldyn-doc => doc
smoldyn-examples
- I package-contains-empty-directory
  - usr/share/doc/smoldyn-examples/examples/S14_lattice/diffusionimages/
  - usr/share/doc/smoldyn-examples/examples/S14_lattice/vtkout/
  - usr/share/doc/smoldyn-examples/examples/S2_config/clusterscripts/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_225/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_226/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_227/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_228/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_229/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_230/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_231/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_232/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_233/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_234/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_235/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_236/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_237/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_238/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_239/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_240/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_241/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_242/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_243/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_244/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_245/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_246/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_247/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_248/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_249/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_250/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_251/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_252/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_253/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_254/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_255/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_256/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_257/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_258/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_260/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_261/
  - usr/share/doc/smoldyn-examples/examples/S95_regression/output_262/
  - usr/share/doc/smoldyn-examples/examples/S9_compartments/diffusecmptimages/
- X duplicate-files
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/abba/abba.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/abba/abba.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/abba/abbasim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/lrm/lrm.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrm.bngl usr/share/doc/smoldyn-examples/examples/S95_regression/lrm.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/lrm/lrmsim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_end/polymer_end.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_end/polymer_end.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_end/polymer_endsim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_end/polymer_endsim.txt
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_mid/polymer_mid.bngl usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_mid/polymer_mid.bngl
  - usr/share/doc/smoldyn-examples/examples/S12_bionetgen/polymer_mid/polymer_midsim.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/BioNetGen/polymer_mid/polymer_midsim.txt
  - usr/share/doc/smoldyn-examples/examples/S7_surfaces/surfacediffuse/ribbon.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/ribbon.txt
  - usr/share/doc/smoldyn-examples/examples/S7_surfaces/surfacediffuse/trispheretriangles.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/trispheretriangles.txt usr/share/doc/smoldyn-examples/examples/S95_regression/trispheretriangles.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/2Dreact/2Dreact.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/2Dreact.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/2Dreact/2Dreact.xlsx usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/surface diffusion/2Dreact.xlsx
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/allostery/allostery.xls usr/share/doc/smoldyn-examples/examples/S8_reactions/conf_spread/confspread.xls
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/bounce/crowding4.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/excluded volume/crowding4.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/wildcards/lrm.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/wildcards/lrm.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2018/note1_lrm/lrm.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/wildcards/polymer_end.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/wildcards/polymer_end.txt
  - usr/share/doc/smoldyn-examples/examples/S8_reactions/wildcards/polymer_mid.txt usr/share/doc/smoldyn-examples/examples/S94_archive/Andrews_2016/wildcards/polymer_mid.txt
–
Package closes ITP bug
- smoldyn:
  - #942842 (Wishlist, ITP): ITP: smoldyn -- spatial stochastic simulator for chemical reaction networks
–
Package is not in Debian
–
d/copyright is in DEP5 format

author: Steve Andrews <steven.s.andrews@gmail.com>

licenses: yes, LGPL-3

Comments

No comments

local:	2.63
upstream:	2.63
url:	https://github.com/ssandrews/Smoldyn/archive/v2.63.tar.gz

author:	Steve Andrews <steven.s.andrews@gmail.com>
licenses:	LGPL-3, yes

local:	2.62
upstream:	2.62
url:	https://github.com/ssandrews/Smoldyn/archive/v2.62.tar.gz