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Details about package breseq

Name:	breseq
Uploader:	Gürkan Myczko <gurkan@phys.ethz.ch> (Debian QA page)
Description:	breseq - Find mutations relative to reference sequences

Package uploads

Upload #9

Information

Version:	0.35.5+ds-1
Uploaded:	2020-12-27 13:57
Source package:	breseq_0.35.5+ds-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	https://barricklab.org/breseq
Vcs-Git:	https://salsa.debian.org/myczko-guest/breseq.git
Vcs-Browser:	https://salsa.debian.org/myczko-guest/breseq
Closes bugs:	#942845

Changelog

 breseq (0.35.5+ds-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942845)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13

–

Package is the latest upstream version

local:	0.35.5+ds
upstream:	0.35.5
url:	https://github.com/barricklab/breseq/archive/v0.35.5.tar.gz

–
Package is not native

format: 3.0 (quilt)
–
"Maintainer" email is the same as the uploader
–
Package has lintian informational tags
breseq
- I spelling-error-in-binary
  - usr/bin/breseq positon position
  - usr/bin/breseq withing within
  - usr/bin/gdtools positon position
  - usr/bin/gdtools therefor therefore
  - usr/bin/gdtools withing within
breseq source
- I patch-not-forwarded-upstream
  - debian/patches/01_moo-docs
- I quilt-patch-using-template-description
  - 01_moo-docs
- I unused-license-paragraph-in-dep5-copyright
  - mit (line 89)
- X debian-watch-does-not-check-gpg-signature
- P maintainer-manual-page
  - debian/breseq.1
  - debian/gdtools.1
- P package-does-not-install-examples
  - extern/samtools-1.3.1/examples/
–
Package closes ITP bug
- breseq:
  - #942845 (Wishlist, ITP): ITP: breseq -- Find mutations relative to reference sequences
–
Package is not in Debian
–
d/copyright is in DEP5 format

author: Jeffrey Barrick <jeffrey.e.barrick@gmail.com>

licenses: GPL-3+, Apache-2.0, GPL-2+, LGPL-2.1+, BSD-3-clause

Comments

No comments

Upload #8

Information

Version:	0.35.4+ds-1
Uploaded:	2020-12-14 13:12
Source package:	breseq_0.35.4+ds-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	https://barricklab.org/breseq
Vcs-Git:	https://salsa.debian.org/myczko-guest/breseq.git
Vcs-Browser:	https://salsa.debian.org/myczko-guest/breseq
Closes bugs:	#942845

Changelog

 breseq (0.35.4+ds-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942845)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13

–

Package is the latest upstream version

local:	0.35.4+ds
upstream:	0.35.4
url:	https://github.com/barricklab/breseq/archive/v0.35.4.tar.gz

–
Package is not native

format: 3.0 (quilt)
–
"Maintainer" email is the same as the uploader
–
Package has lintian informational tags
breseq
- I spelling-error-in-binary
  - usr/bin/breseq accomodates accommodates
  - usr/bin/breseq positon position
  - usr/bin/breseq unamed unnamed
  - usr/bin/breseq withing within
  - usr/bin/gdtools accomodates accommodates
  - usr/bin/gdtools accross across
  - usr/bin/gdtools beween between
  - usr/bin/gdtools formating formatting
  - usr/bin/gdtools occuring occurring
  - usr/bin/gdtools positon position
  - usr/bin/gdtools signficant significant
  - usr/bin/gdtools therefor therefore
  - usr/bin/gdtools unamed unnamed
  - usr/bin/gdtools withing within
breseq source
- I patch-not-forwarded-upstream
  - debian/patches/01_moo-docs
- I quilt-patch-using-template-description
  - 01_moo-docs
- I unused-license-paragraph-in-dep5-copyright
  - mit (line 89)
- X debian-watch-does-not-check-gpg-signature
- P maintainer-manual-page
  - debian/breseq.1
  - debian/gdtools.1
- P package-does-not-install-examples
  - extern/samtools-1.3.1/examples/
–
Package closes ITP bug
- breseq:
  - #942845 (Wishlist, ITP): ITP: breseq -- Find mutations relative to reference sequences
–
Package is not in Debian
–
d/copyright is in DEP5 format

author: Jeffrey Barrick <jeffrey.e.barrick@gmail.com>

licenses: GPL-2+, BSD-3-clause, LGPL-2.1+, Apache-2.0, GPL-3+

Comments

No comments

Upload #7

Information

Version:	0.35.4+ds-1
Uploaded:	2020-12-14 12:42
Source package:	breseq_0.35.4+ds-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	https://barricklab.org/breseq
Vcs-Git:	https://salsa.debian.org/myczko-guest/breseq.git
Vcs-Browser:	https://salsa.debian.org/myczko-guest/breseq
Closes bugs:	#942845

Changelog

 breseq (0.35.4+ds-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942845)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13

–

Package is the latest upstream version

local:	0.35.4+ds
upstream:	0.35.4
url:	https://github.com/barricklab/breseq/archive/v0.35.4.tar.gz

–
Package is not native

format: 3.0 (quilt)
–
"Maintainer" email is the same as the uploader
–
Package has lintian warnings
breseq
- I spelling-error-in-binary
  - usr/bin/breseq accomodates accommodates
  - usr/bin/breseq positon position
  - usr/bin/breseq unamed unnamed
  - usr/bin/breseq withing within
  - usr/bin/gdtools accomodates accommodates
  - usr/bin/gdtools accross across
  - usr/bin/gdtools beween between
  - usr/bin/gdtools formating formatting
  - usr/bin/gdtools occuring occurring
  - usr/bin/gdtools positon position
  - usr/bin/gdtools signficant significant
  - usr/bin/gdtools therefor therefore
  - usr/bin/gdtools unamed unnamed
  - usr/bin/gdtools withing within
breseq source
- W missing-license-paragraph-in-dep5-copyright
  - lgpl-2.1 (line 32)
- I patch-not-forwarded-upstream
  - debian/patches/01_moo-docs
- I quilt-patch-using-template-description
  - 01_moo-docs
- I unused-file-paragraph-in-dep5-copyright
  - paragraph at line 71
  - paragraph at line 75
  - paragraph at line 79
- I unused-override
  - source-is-missing *
- I wildcard-matches-nothing-in-dep5-copyright
  - documentation/_static/doctools.js (line 79)
  - documentation/_static/jquery* (line 75)
  - documentation/_static/searchtools.js (line 79)
  - documentation/_static/sidebar.js (line 79)
  - documentation/_static/underscore* (line 71)
  - documentation/_static/websupport.js (line 79)
- X debian-watch-does-not-check-gpg-signature
- P maintainer-manual-page
  - debian/breseq.1
  - debian/gdtools.1
- P package-does-not-install-examples
  - extern/samtools-1.3.1/examples/
–
Package closes ITP bug
- breseq:
  - #942845 (Wishlist, ITP): ITP: breseq -- Find mutations relative to reference sequences
–
Package is not in Debian

–

d/copyright is in DEP5 format

author:	Jeffrey Barrick <jeffrey.e.barrick@gmail.com>
licenses:	LGPL-2.1, BSD-3-clause, GPL-2+, MIT, BSD-2-clause, Apache-2.0, GPL-3+

Comments

No comments

Upload #6

Information

Version:	0.35.4+ds-1
Uploaded:	2020-12-14 07:42
Source package:	breseq_0.35.4+ds-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	https://barricklab.org/breseq
Vcs-Git:	https://salsa.debian.org/myczko-guest/breseq.git
Vcs-Browser:	https://salsa.debian.org/myczko-guest/breseq
Closes bugs:	#942845

Changelog

 breseq (0.35.4+ds-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942845)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13

–

Package is the latest upstream version

local:	0.35.4+ds
upstream:	0.35.4
url:	https://github.com/barricklab/breseq/archive/v0.35.4.tar.gz

–
Package is not native

format: 3.0 (quilt)
–
"Maintainer" email is the same as the uploader
–
Package has lintian informational tags
breseq
- I spelling-error-in-binary
  - usr/bin/breseq accomodates accommodates
  - usr/bin/breseq positon position
  - usr/bin/breseq unamed unnamed
  - usr/bin/breseq withing within
  - usr/bin/gdtools accomodates accommodates
  - usr/bin/gdtools accross across
  - usr/bin/gdtools beween between
  - usr/bin/gdtools formating formatting
  - usr/bin/gdtools occuring occurring
  - usr/bin/gdtools positon position
  - usr/bin/gdtools signficant significant
  - usr/bin/gdtools therefor therefore
  - usr/bin/gdtools unamed unnamed
  - usr/bin/gdtools withing within
breseq source
- I patch-not-forwarded-upstream
  - debian/patches/01_moo-docs
- I quilt-patch-using-template-description
  - 01_moo-docs
- I unused-file-paragraph-in-dep5-copyright
  - paragraph at line 30
  - paragraph at line 34
  - paragraph at line 38
- I unused-override
  - source-is-missing *
- I wildcard-matches-nothing-in-dep5-copyright
  - documentation/_static/doctools.js (line 38)
  - documentation/_static/jquery* (line 34)
  - documentation/_static/searchtools.js (line 38)
  - documentation/_static/sidebar.js (line 38)
  - documentation/_static/underscore* (line 30)
  - documentation/_static/websupport.js (line 38)
- X debian-watch-does-not-check-gpg-signature
- P maintainer-manual-page
  - debian/breseq.1
  - debian/gdtools.1
- P package-does-not-install-examples
  - extern/samtools-1.3.1/examples/
–
Package closes ITP bug
- breseq:
  - #942845 (Wishlist, ITP): ITP: breseq -- Find mutations relative to reference sequences
–
Package is not in Debian
–
d/copyright is in DEP5 format

author: Jeffrey Barrick <jeffrey.e.barrick@gmail.com>

licenses: GPL-3+, MIT, BSD-2-clause

Comments

No comments

Upload #5

Information

Version:	0.35.4-1
Uploaded:	2020-12-14 07:27
Source package:	breseq_0.35.4-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	https://barricklab.org/breseq
Vcs-Git:	https://salsa.debian.org/myczko-guest/breseq.git
Vcs-Browser:	https://salsa.debian.org/myczko-guest/breseq
Closes bugs:	#942845

Changelog

 breseq (0.35.4-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942845)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13

–

Package is the latest upstream version

local:	0.35.4
upstream:	0.35.4
url:	https://github.com/barricklab/breseq/archive/v0.35.4.tar.gz

–
Package is not native

format: 3.0 (quilt)
–
"Maintainer" email is the same as the uploader
–
Package has lintian informational tags
breseq
- I spelling-error-in-binary
  - usr/bin/breseq accomodates accommodates
  - usr/bin/breseq positon position
  - usr/bin/breseq unamed unnamed
  - usr/bin/breseq withing within
  - usr/bin/gdtools accomodates accommodates
  - usr/bin/gdtools accross across
  - usr/bin/gdtools beween between
  - usr/bin/gdtools formating formatting
  - usr/bin/gdtools occuring occurring
  - usr/bin/gdtools positon position
  - usr/bin/gdtools signficant significant
  - usr/bin/gdtools therefor therefore
  - usr/bin/gdtools unamed unnamed
  - usr/bin/gdtools withing within
breseq source
- I patch-not-forwarded-upstream
  - debian/patches/01_moo-docs
- I quilt-patch-using-template-description
  - 01_moo-docs
- I unused-file-paragraph-in-dep5-copyright
  - paragraph at line 29
  - paragraph at line 33
  - paragraph at line 37
- I unused-override
  - source-is-missing *
- I wildcard-matches-nothing-in-dep5-copyright
  - documentation/_static/doctools.js (line 37)
  - documentation/_static/jquery* (line 33)
  - documentation/_static/searchtools.js (line 37)
  - documentation/_static/sidebar.js (line 37)
  - documentation/_static/underscore* (line 29)
  - documentation/_static/websupport.js (line 37)
- X debian-watch-does-not-check-gpg-signature
- P maintainer-manual-page
  - debian/breseq.1
  - debian/gdtools.1
- P package-does-not-install-examples
  - extern/samtools-1.3.1/examples/
–
Package closes ITP bug
- breseq:
  - #942845 (Wishlist, ITP): ITP: breseq -- Find mutations relative to reference sequences
–
Package is not in Debian
–
d/copyright is in DEP5 format

author: Jeffrey Barrick <jeffrey.e.barrick@gmail.com>

licenses: GPL-3+, MIT, BSD-2-clause

Comments

No comments

Upload #4

Information

Version:	0.35.4-1
Uploaded:	2020-12-11 11:49
Source package:	breseq_0.35.4-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	https://barricklab.org/breseq
Vcs-Git:	https://salsa.debian.org/myczko-guest/breseq.git
Vcs-Browser:	https://salsa.debian.org/myczko-guest/breseq
Closes bugs:	#942845

Changelog

 breseq (0.35.4-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942845)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13

–

Package is the latest upstream version

local:	0.35.4
upstream:	0.35.4
url:	https://github.com/barricklab/breseq/archive/v0.35.4.tar.gz

–
Package is not native

format: 3.0 (quilt)
–
"Maintainer" email is the same as the uploader
–
Package has lintian warnings
breseq
- W embedded-javascript-library
  - usr/share/doc/breseq/_static/doctools.js please use sphinx
  - usr/share/doc/breseq/_static/jquery-1.11.1.js please use libjs-jquery
  - usr/share/doc/breseq/_static/jquery.js please use libjs-jquery
  - usr/share/doc/breseq/_static/searchtools.js please use sphinx
  - usr/share/doc/breseq/_static/underscore.js please use libjs-underscore
- I possible-documentation-but-no-doc-base-registration
- I spelling-error-in-binary
  - usr/bin/breseq accomodates accommodates
  - usr/bin/breseq positon position
  - usr/bin/breseq unamed unnamed
  - usr/bin/breseq withing within
  - usr/bin/gdtools accomodates accommodates
  - usr/bin/gdtools accross across
  - usr/bin/gdtools beween between
  - usr/bin/gdtools formating formatting
  - usr/bin/gdtools occuring occurring
  - usr/bin/gdtools positon position
  - usr/bin/gdtools signficant significant
  - usr/bin/gdtools therefor therefore
  - usr/bin/gdtools unamed unnamed
  - usr/bin/gdtools withing within
breseq source
- I patch-not-forwarded-upstream
  - debian/patches/01_privacy-breach-drop
- I quilt-patch-using-template-description
  - 01_privacy-breach-drop
- X debian-watch-does-not-check-gpg-signature
- P maintainer-manual-page
  - debian/breseq.1
  - debian/gdtools.1
- P package-does-not-install-examples
  - extern/samtools-1.3.1/examples/
- P source-contains-prebuilt-javascript-object
  - documentation/_static/jquery.js line length is 32086 characters (>512)
  - documentation/_static/underscore.js line length is 519 characters (>512)
- P source-contains-prebuilt-sphinx-documentation
  - documentation/
- P very-long-line-length-in-source-file
  - documentation/_static/jquery.js line length is 32086 characters (>512)
  - documentation/_static/underscore.js line length is 519 characters (>512)
- O source-is-missing
  - documentation/_static/jquery.js line length is 32086 characters (>512) (override comment: Partly included in the executable binary with qt resource links. Upstream distributes it like this, repacking would be overkill though, so <strike>tell lintian to not complain:</strike>)
  - documentation/_static/underscore.js line length is 519 characters (>512) (override comment: Partly included in the executable binary with qt resource links. Upstream distributes it like this, repacking would be overkill though, so <strike>tell lintian to not complain:</strike>)
–
Package closes ITP bug
- breseq:
  - #942845 (Wishlist, ITP): ITP: breseq -- Find mutations relative to reference sequences
–
Package is not in Debian
–
d/copyright is in DEP5 format

author: Jeffrey Barrick <jeffrey.e.barrick@gmail.com>

licenses: GPL-3+, MIT, BSD-2-clause

Comments

No comments

Upload #3

Information

Version:	0.35.4-1
Uploaded:	2020-12-11 08:57
Source package:	breseq_0.35.4-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	https://barricklab.org/breseq
Vcs-Git:	https://salsa.debian.org/myczko-guest/breseq.git
Vcs-Browser:	https://salsa.debian.org/myczko-guest/breseq
Closes bugs:	#942845

Changelog

 breseq (0.35.4-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942845)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13

–

Package is the latest upstream version

local:	0.35.4
upstream:	0.35.4
url:	https://github.com/barricklab/breseq/archive/v0.35.4.tar.gz

–
Package is not native

format: 3.0 (quilt)
–
"Maintainer" email is the same as the uploader
–
Package has lintian warnings
breseq
- W embedded-javascript-library
  - usr/share/doc/breseq/_static/doctools.js please use sphinx
  - usr/share/doc/breseq/_static/jquery-1.11.1.js please use libjs-jquery
  - usr/share/doc/breseq/_static/jquery.js please use libjs-jquery
  - usr/share/doc/breseq/_static/searchtools.js please use sphinx
  - usr/share/doc/breseq/_static/underscore.js please use libjs-underscore
- W privacy-breach-generic
  - usr/share/doc/breseq/installation.html [<img alt="https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat" src="https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat" />] (https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)
- I possible-documentation-but-no-doc-base-registration
- I spelling-error-in-binary
  - usr/bin/breseq accomodates accommodates
  - usr/bin/breseq positon position
  - usr/bin/breseq unamed unnamed
  - usr/bin/breseq withing within
  - usr/bin/gdtools accomodates accommodates
  - usr/bin/gdtools accross across
  - usr/bin/gdtools beween between
  - usr/bin/gdtools formating formatting
  - usr/bin/gdtools occuring occurring
  - usr/bin/gdtools positon position
  - usr/bin/gdtools signficant significant
  - usr/bin/gdtools therefor therefore
  - usr/bin/gdtools unamed unnamed
  - usr/bin/gdtools withing within
breseq source
- X debian-watch-does-not-check-gpg-signature
- P maintainer-manual-page
  - debian/breseq.1
  - debian/gdtools.1
- P package-does-not-install-examples
  - extern/samtools-1.3.1/examples/
- P source-contains-prebuilt-javascript-object
  - documentation/_static/jquery.js line length is 32086 characters (>512)
  - documentation/_static/underscore.js line length is 519 characters (>512)
- P source-contains-prebuilt-sphinx-documentation
  - documentation/
- P spelling-in-override-comment
  - source-is-missing (line 1) exectuable executable
- P very-long-line-length-in-source-file
  - documentation/_static/jquery.js line length is 32086 characters (>512)
  - documentation/_static/underscore.js line length is 519 characters (>512)
- O source-is-missing
  - documentation/_static/jquery.js line length is 32086 characters (>512) (override comment: Partly included in the exectuable binary with qt resource links. Upstream distributes it like this, repacking would be overkill though, so <strike>tell lintian to not complain:</strike> tell lintian to just fuck the shut up:)
  - documentation/_static/underscore.js line length is 519 characters (>512) (override comment: Partly included in the exectuable binary with qt resource links. Upstream distributes it like this, repacking would be overkill though, so <strike>tell lintian to not complain:</strike> tell lintian to just fuck the shut up:)
–
Package closes ITP bug
- breseq:
  - #942845 (Wishlist, ITP): ITP: breseq -- Find mutations relative to reference sequences
–
Package is not in Debian
–
d/copyright is in DEP5 format

author: Jeffrey Barrick <jeffrey.e.barrick@gmail.com>

licenses: GPL-3+, MIT, BSD-2-clause

Comments

No comments

Upload #2

Information

Version:	0.35.4-1
Uploaded:	2020-11-01 21:12
Source package:	breseq_0.35.4-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	https://barricklab.org/breseq
Vcs-Git:	https://salsa.debian.org/myczko-guest/breseq.git
Vcs-Browser:	https://salsa.debian.org/myczko-guest/breseq
Closes bugs:	#942845

Changelog

 breseq (0.35.4-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942845)

QA information

–
Package uses debhelper-compat

Debhelper compatibility level 13

–

Package is the latest upstream version

local:	0.35.4
upstream:	0.35.4
url:	https://github.com/barricklab/breseq/archive/v0.35.4.tar.gz

–
Package is not native

format: 3.0 (quilt)
–
"Maintainer" email is the same as the uploader
–
Package has lintian warnings
breseq
- W embedded-javascript-library
  - usr/share/doc/breseq/_static/doctools.js please use sphinx
  - usr/share/doc/breseq/_static/jquery-1.11.1.js please use libjs-jquery
  - usr/share/doc/breseq/_static/jquery.js please use libjs-jquery
  - usr/share/doc/breseq/_static/searchtools.js please use sphinx
  - usr/share/doc/breseq/_static/underscore.js please use libjs-underscore
- W privacy-breach-generic
  - usr/share/doc/breseq/installation.html [<img alt="https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat" src="https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat" />] (https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)
- I possible-documentation-but-no-doc-base-registration
- I spelling-error-in-binary
  - usr/bin/breseq accomodates accommodates
  - usr/bin/breseq positon position
  - usr/bin/breseq unamed unnamed
  - usr/bin/breseq withing within
  - usr/bin/gdtools accomodates accommodates
  - usr/bin/gdtools accross across
  - usr/bin/gdtools beween between
  - usr/bin/gdtools formating formatting
  - usr/bin/gdtools occuring occurring
  - usr/bin/gdtools positon position
  - usr/bin/gdtools signficant significant
  - usr/bin/gdtools therefor therefore
  - usr/bin/gdtools unamed unnamed
  - usr/bin/gdtools withing within
breseq source
- X debian-rules-uses-as-needed-linker-flag
  - line 11
- X debian-watch-does-not-check-gpg-signature
- P maintainer-manual-page
  - debian/breseq.1
  - debian/gdtools.1
- P package-does-not-install-examples
  - extern/samtools-1.3.1/examples/
- P source-contains-prebuilt-javascript-object
  - documentation/_static/jquery.js line length is 32086 characters (>512)
  - documentation/_static/underscore.js line length is 519 characters (>512)
- P source-contains-prebuilt-sphinx-documentation
  - documentation/
- P spelling-in-override-comment
  - source-is-missing (line 1) exectuable executable
- P very-long-line-length-in-source-file
  - documentation/_static/jquery.js line length is 32086 characters (>512)
  - documentation/_static/underscore.js line length is 519 characters (>512)
- O source-is-missing
  - documentation/_static/jquery.js line length is 32086 characters (>512) (override comment: Partly included in the exectuable binary with qt resource links. Upstream distributes it like this, repacking would be overkill though, so <strike>tell lintian to not complain:</strike> tell lintian to just fuck the shut up:)
  - documentation/_static/underscore.js line length is 519 characters (>512) (override comment: Partly included in the exectuable binary with qt resource links. Upstream distributes it like this, repacking would be overkill though, so <strike>tell lintian to not complain:</strike> tell lintian to just fuck the shut up:)
–
Package closes ITP bug
- breseq:
  - #942845 (Wishlist, ITP): ITP: breseq -- Find mutations relative to reference sequences
–
Package is not in Debian
–
d/copyright is in DEP5 format

author: Jeffrey Barrick <jeffrey.e.barrick@gmail.com>

licenses: BSD-2-clause, MIT, GPL-3+

Comments

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Upload #1

Information

Version:	0.35.3-1
Uploaded:	2020-10-01 11:22
Source package:	breseq_0.35.3-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	http://barricklab.org/breseq
Closes bugs:	#942845

Changelog

 breseq (0.35.3-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942845)

QA information

–
Package uses debhelper

Debhelper compatibility level 11

–

Package is the latest upstream version

local:	0.35.3
upstream:	0.35.3
url:	https://github.com/barricklab/breseq/archive/v0.35.3.tar.gz

–
Package is not native

format: 3.0 (quilt)
–
"Maintainer" email is the same as the uploader
–
Package has lintian warnings
breseq
- W embedded-javascript-library
  - usr/share/doc/breseq/_static/doctools.js please use sphinx
  - usr/share/doc/breseq/_static/jquery-1.11.1.js please use libjs-jquery
  - usr/share/doc/breseq/_static/jquery.js please use libjs-jquery
  - usr/share/doc/breseq/_static/searchtools.js please use sphinx
  - usr/share/doc/breseq/_static/underscore.js please use libjs-underscore
- W privacy-breach-generic
  - usr/share/doc/breseq/installation.html [<img alt="https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat" src="https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat" />] (https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)
- I possible-documentation-but-no-doc-base-registration
- I spelling-error-in-binary
  - usr/bin/breseq accomodates accommodates
  - usr/bin/breseq positon position
  - usr/bin/breseq unamed unnamed
  - usr/bin/breseq withing within
  - usr/bin/gdtools accomodates accommodates
  - usr/bin/gdtools accross across
  - usr/bin/gdtools beween between
  - usr/bin/gdtools formating formatting
  - usr/bin/gdtools occuring occurring
  - usr/bin/gdtools positon position
  - usr/bin/gdtools signficant significant
  - usr/bin/gdtools therefor therefore
  - usr/bin/gdtools unamed unnamed
  - usr/bin/gdtools withing within
breseq source
- X debian-rules-uses-as-needed-linker-flag
  - line 11
- X debian-watch-does-not-check-gpg-signature
- X upstream-metadata-file-is-missing
- P maintainer-manual-page
  - debian/breseq.1
  - debian/gdtools.1
- P package-does-not-install-examples
  - extern/samtools-1.3.1/examples/
- P package-uses-old-debhelper-compat-version
  - 11
- P silent-on-rules-requiring-root
- P source-contains-prebuilt-javascript-object
  - documentation/_static/jquery.js line length is 32086 characters (>512)
  - documentation/_static/underscore.js line length is 519 characters (>512)
- P source-contains-prebuilt-sphinx-documentation
  - documentation/
- P spelling-in-override-comment
  - source-is-missing (line 1) exectuable executable
- P uses-debhelper-compat-file
- P very-long-line-length-in-source-file
  - documentation/_static/jquery.js line length is 32086 characters (>512)
  - documentation/_static/underscore.js line length is 519 characters (>512)
- O source-is-missing
  - documentation/_static/jquery.js line length is 32086 characters (>512) (override comment: Partly included in the exectuable binary with qt resource links. Upstream distributes it like this, repacking would be overkill though, so <strike>tell lintian to not complain:</strike> tell lintian to just fuck the shut up:)
  - documentation/_static/underscore.js line length is 519 characters (>512) (override comment: Partly included in the exectuable binary with qt resource links. Upstream distributes it like this, repacking would be overkill though, so <strike>tell lintian to not complain:</strike> tell lintian to just fuck the shut up:)
–
Package closes ITP bug
- breseq:
  - #942845 (Wishlist, ITP): ITP: breseq -- Find mutations relative to reference sequences
–
No VCS field present
–
Package is not in Debian
–
Upstream-Contact missing from d/copyright

author: None

licenses: GPL-3+, MIT, BSD-2-clause

Comments

No comments

author:	None
licenses:	GPL-3+, MIT, BSD-2-clause