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Details about package breseq

Name:	breseq
Uploader:	Gürkan Myczko <gurkan@phys.ethz.ch> (Debian QA page)
Description:	breseq - Find mutations relative to reference sequences

Package uploads

Upload #1

Information

Version:	0.35.7-1
Uploaded:	2021-08-17 20:35
Source package:	breseq_0.35.7-1.dsc
Distribution:	unstable
Section:	science
Priority:	optional
Homepage:	https://barricklab.org/breseq
Vcs-Git:	https://salsa.debian.org/myczko-guest/breseq.git
Vcs-Browser:	https://salsa.debian.org/myczko-guest/breseq
Closes bugs:	#942845

Changelog

 breseq (0.35.7-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #942845)

QA information

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Package uses debhelper-compat

Debhelper compatibility level 13

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Package is the latest upstream version

local:	0.35.7
upstream:	0.35.7
url:	https://github.com/barricklab/breseq/archive/refs/tags/v0.35.7.tar.gz

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Package is not native

format: 3.0 (quilt)
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"Maintainer" email is the same as the uploader
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Package has lintian warnings
breseq
- W embedded-javascript-library
  - usr/share/doc/breseq/_static/doctools.js please use sphinx
  - usr/share/doc/breseq/_static/jquery-3.5.1.js please use libjs-jquery
  - usr/share/doc/breseq/_static/jquery.js please use libjs-jquery
  - usr/share/doc/breseq/_static/language_data.js please use sphinx
  - usr/share/doc/breseq/_static/searchtools.js please use sphinx
  - usr/share/doc/breseq/_static/underscore.js please use libjs-underscore
- W privacy-breach-generic
  - usr/share/doc/breseq/installation.html [<img alt="https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat" src="https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat" />] (https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)
- I possible-documentation-but-no-doc-base-registration
- I spelling-error-in-binary
  - usr/bin/breseq positon position
  - usr/bin/breseq withing within
  - usr/bin/gdtools positon position
  - usr/bin/gdtools therefor therefore
  - usr/bin/gdtools withing within
- X duplicate-files
  - usr/share/doc/breseq/_static/file.png usr/share/doc/breseq/_static/file.png.mp_1606243848
  - usr/share/doc/breseq/_static/minus.png usr/share/doc/breseq/_static/minus.png.mp_1606243848
  - usr/share/doc/breseq/_static/plus.png usr/share/doc/breseq/_static/plus.png.mp_1606243848
- P image-file-has-unexpected-name
  - usr/share/doc/breseq/_static/file.png.mp_1606243848 (is PNG)
  - usr/share/doc/breseq/_static/minus.png.mp_1606243848 (is PNG)
  - usr/share/doc/breseq/_static/plus.png.mp_1606243848 (is PNG)
breseq source
- I patch-not-forwarded-upstream
  - debian/patches/01_privacy-breach-drop
  - debian/patches/nice
  - debian/patches/yes
- I quilt-patch-using-template-description
  - nice
  - yes
- I wildcard-matches-nothing-in-dep5-copyright
  - documentation/_static/websupport.js (line 54)
- X debian-watch-does-not-check-gpg-signature
- P maintainer-manual-page
  - debian/breseq.1
  - debian/gdtools.1
- P package-does-not-install-examples
  - extern/samtools-1.3.1/examples/
- P source-contains-prebuilt-javascript-object
  - documentation/_static/jquery.js line length is 32683 characters (>512)
  - documentation/_static/underscore.js line length is 519 characters (>512)
- P source-contains-prebuilt-sphinx-documentation
  - documentation/
- P very-long-line-length-in-source-file
  - documentation/_static/jquery.js line length is 32683 characters (>512)
  - documentation/_static/underscore.js line length is 519 characters (>512)
- O source-is-missing
  - documentation/_static/jquery.js line length is 32683 characters (>512) (override comment: Partly included in the executable binary with qt resource links. Upstream distributes it like this, repacking would be overkill though, so <strike>tell lintian to not complain:</strike>)
  - documentation/_static/underscore.js line length is 519 characters (>512) (override comment: Partly included in the executable binary with qt resource links. Upstream distributes it like this, repacking would be overkill though, so <strike>tell lintian to not complain:</strike>)
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Package closes ITP bug
- breseq:
  - #942845 (Wishlist, ITP): ITP: breseq -- Find mutations relative to reference sequences
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Package is not in Debian
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d/copyright is in DEP5 format

author: Jeffrey Barrick <jeffrey.e.barrick@gmail.com>

licenses: MIT, GPL-3+, BSD-2-clause

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author:	Jeffrey Barrick <jeffrey.e.barrick@gmail.com>
licenses:	MIT, GPL-3+, BSD-2-clause